PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001097.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 420aa    MW: 45225.4 Da    PI: 6.3008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001097.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.4e-17228274455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Do001097.1 228 VHNLSERRRRDRINEKMRVLQELIPHC-----NKTDKASILDETIEYLKSLQ 274
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-17220278No hitNo description
SuperFamilySSF474591.06E-20222288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.279224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-21228283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-17230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDGNARPAAN QKKPIVTDDD LVELLWHNGS VVAQPQAHQR PAPSDCPGSS GLTGEETAAW  60
FPDTLDDALE EDLYTQLWYS SIVDAAAHHE GTLPGPSSQP PPLELAHPAR PPVGSSGVES  120
SWAGDICSTF YGSNQVPMMP AGVSRGKEAA LQSEVPRGAG TGTSSSGGSG SNYGGSGLPS  180
DSGHVQKRKG RCRDDSDSRS EDAECEATEE TKSSRRSGTK RRTRAAEVHN LSERRRRDRI  240
NEKMRVLQEL IPHCNKTDKA SILDETIEYL KSLQMQVQIM WMTSGMAPMM FPGAHQFMPP  300
MALGMNSACI PAAQGLSQMP RLPYMNHPLP NHIPPNSSPA MNPVNSLSVA NQMQNVHLRE  360
ASNHFLHPDG GQTAVPQVPG THVYGPEISQ AEQHSRILEV PASTVVPTSR AGQPRTYDGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236KRRTRAAEVHNLSERRRR
2232237ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_004981540.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_012704121.10.0PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLK4AAB20.0K4AAB2_SETIT; Uncharacterized protein
STRINGSi035818m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.11e-29phytochrome interacting factor 3-like 6